assertEquals(changer.getCommandLine(),
                "uk.ac.sanger.npg.picard.ChangeBamHeader INPUT=testdata/bam/6210_8.sam OUTPUT=testdata/6210_8_header_changed.bam PG=[ID:samtools_sorting;PN:samtools;VN:0.1.12a (r862);CL:samtools sort] SAMPLE=newSM LIBRARY=newLB DESCRIPTION=newDS TMP_DIR=[testdata] VALIDATION_STRINGENCY=SILENT CREATE_MD5_FILE=true    VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false"
                    );
<<<<<<< HEAD
    
=======
>>>>>>> f2f36806816075fb32a0b823bbcfc05eb8af0dd7
    /**
     * Test output bam MD5
     */

        assertEquals(changer.getCommandLine(),
                "uk.ac.sanger.npg.picard.ChangeBamHeader INPUT=testdata/bam/6210_8.sam OUTPUT=testdata/6210_8_header_changed.bam PG=[ID:samtools_sorting;PN:samtools;VN:0.1.12a (r862);CL:samtools sort] SAMPLE=newSM LIBRARY=newLB DESCRIPTION=newDS TMP_DIR=[testdata] VALIDATION_STRINGENCY=SILENT CREATE_MD5_FILE=true    VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false"
                    );
    
    /**
     * Test output bam MD5
     */